Please use this identifier to cite or link to this item: https://hdl.handle.net/10216/114491
Author(s): Santos, CL
Nebenzahl-Guimaraes, H
Mendes, MV
Soolingen, D
Correia-Neves, M
Title: To Be or Not to Be a Pseudogene: A Molecular Epidemiological Approach to the mclx Genes and Its Impact in Tuberculosis
Publisher: Public Library of Science
Issue Date: 2015
Abstract: Tuberculosis presents a myriad of symptoms, progression routes and propagation patterns not yet fully understood. Whereas for a long time research has focused solely on the patient immunity and overall susceptibility, it is nowadays widely accepted that the genetic diversity of its causative agent, Mycobacterium tuberculosis, plays a key role in this dynamic. This study focuses on a particular family of genes, the mclxs (Mycobacterium cyclase/LuxR-like genes), which codify for a particular and nearly mycobacterial-exclusive combination of protein domains. mclxs genes were found to be pseudogenized by frameshift-causing insertion(s)/deletion(s) in a considerable number of M. tuberculosis complex strains and clinical isolates. To discern the functional implications of the pseudogenization, we have analysed the pattern of frameshift-causing mutations in a group of M. tuberculosis isolates while taking into account their microbial-, patient- and disease-related traits. Our logistic regression-based analyses have revealed disparate effects associated with the transcriptional inactivation of two mclx genes. In fact, mclx2 (Rv1358) pseudogenization appears to be primarily driven by the microbial phylogenetic background, being mainly related to the Euro-American (EAm) lineage; on the other hand, mclx3 (Rv2488c) presents a higher tendency for pseudogenization among isolates from patients born on the Western Pacific area, and from isolates causing extra-pulmonary infections. These results contribute to the overall knowledge on the biology of M. tuberculosis infection, whereas at the same time launch the necessary basis for the functional assessment of these so far overlooked genes.
Subject: Female
Genes, Bacterial/genetics
Genetic Variation/genetics
Genome, Bacterial
Humans
Male
Middle Aged
Molecular Epidemiology
Mycobacterium tuberculosis/genetics
Mycobacterium tuberculosis/isolation & purification
Phylogeny
Pseudogenes/genetics
Retrospective Studies
Tuberculosis/microbiology
URI: http://hdl.handle.net/10216/114491
Source: PLoS One vol. 10(6):e0128983
Related Information: info:eu-repo/grantAgreement/FCT/COMPETE/133016/PT
info:eu-repo/grantAgreement/FCT/SFRH/SFRH%2FBD%2F33902%2F2009/PT
Document Type: Artigo em Revista Científica Internacional
Rights: openAccess
License: https://creativecommons.org/licenses/by/4.0/
Appears in Collections:I3S - Artigo em Revista Científica Internacional

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